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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009597076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39951.9 Da PI: 8.8537 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G g+W++ +++ + R++k+c++rw +yl XP_009597076.1 14 KGPWTPEEDRKLLSCIEEHGCGSWRALPAKADLQRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+ +++++++lG++ W++Ia++++ Rt++++k++w++ XP_009597076.1 67 RGKFSLQEERTIIQLHALLGNR-WSAIAAYLP-SRTDNEIKNYWNS 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.891 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.07E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.68E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.271 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-10 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGRSKCCDKQ GLKKGPWTPE EDRKLLSCIE EHGCGSWRAL PAKADLQRCG KSCRLRWINY 60 LRPDIKRGKF SLQEERTIIQ LHALLGNRWS AIAAYLPSRT DNEIKNYWNS RLKKRLTKMG 120 IDPMTHKPKI TNNINGSSND QSKYVANLSH MAEWESARLE AEARLVRRSK DHSKFLFNNT 180 RNNNNNNNNX NNYVVSQPYY QLPCLDILKA WQRASTKLPT TNDIRSILLD GFANKNLESS 240 IPSTLNSSGN LFMNNVPCIT KVGDQNLPLS TITCLENPCP TKDVQTDLPS FMQEFSELFD 300 PEYTQNSTNN FNGIQVDNFM GSCSGDFEDN KFNWNNFPYL VTSPIGSPVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597076.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | M1BKS8 | 1e-171 | M1BKS8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400047446 | 1e-171 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 6e-80 | myb domain protein 16 |